PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009771895.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ERF
Protein Properties Length: 236aa    MW: 26475.8 Da    PI: 9.0236
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009771895.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.61.8e-19104154255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     +y+GVr+++ +g+++AeIrdp +ng  +r++lg++ t eeAa a+++a+ +++g
  XP_009771895.1 104 HYRGVRRRP-WGKFAAEIRDPAKNG--ARVWLGTYETDEEAAIAYDKAAYRMRG 154
                     7********.***********9987..*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.109.7E-32103163IPR001471AP2/ERF domain
PfamPF008474.3E-14104154IPR001471AP2/ERF domain
SMARTSM003803.0E-35104168IPR001471AP2/ERF domain
CDDcd000185.30E-29104163No hitNo description
PROSITE profilePS5103224.131104162IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-23104164IPR016177DNA-binding domain
PRINTSPR003674.2E-13105116IPR001471AP2/ERF domain
PRINTSPR003674.2E-13144164IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MNQPIYTELP PANFPGDFPV YRRNSSFSRL IPCLTETWGD LPLKVDDSED MVIYTLLKDA  60
LNVGWSPFNF SAGEVKSEQR EEEIVVSPAE TTAAPAAELP RGRHYRGVRR RPWGKFAAEI  120
RDPAKNGARV WLGTYETDEE AAIAYDKAAY RMRGSKAHLN FPHRIGLNEP EPVRVTAKRR  180
ASPEPASSSE NSSPKRRRKA VAAEKSEAVE VESKSNVLQT GCQVELLTRR HQLLVS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-33101169270ATERF1
3gcc_A1e-33101169270ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1177198KRRASPEPASSSENSSPKRRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankTOBBY4A0.0D38123.1 Nicotiana tabacum mRNA for ERF1, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009771895.11e-175PREDICTED: ethylene-responsive transcription factor 1
SwissprotQ404761e-175ERF1_TOBAC; Ethylene-responsive transcription factor 1
TrEMBLA0A060N2E71e-164A0A060N2E7_9SOLA; Ethylene response factor (Fragment)
STRINGPGSC0003DMT4000413311e-130(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40542245
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17500.14e-48ethylene responsive element binding factor 1